You can empty the Start\Run program list using the steps provided in the following tutorial.
Run this code, saved as runStop.reg, to add the necessary registry keys to clear your run command.
NOTE: This may require a restart.
REGEDIT4
[-HKEY_CURRENT_USER\Software\Microsoft\Windows\CurrentVersion\Explorer\RunMRU]
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-William. ยง (marivn_gohan)